U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX5141199: GridION sequencing
1 OXFORD_NANOPORE (GridION) run: 24,901 spots, 202.4M bases, 181.3Mb downloads

Submitted by: CNAG-CRG
Study: Comprehensive genomic survey of carbapenem-resistant Enterobacteriaceae in Spain
show Abstracthide Abstract
To get a wide view of the distribution, the characteristics and the mechanisms of resistance to carbapenem in Enterobacteria in Spain, 461 strains were isolated from 41 Spanish hospitals and sequenced both with long and short reads to perform hybrid assemblies which allowed us to define their genetic characteristics, the genomic mechanisms which bear the carbapenemase-enzymes, the mechanisms associated with other antimicrobials, the molecular epidemiology of 16S rRNA methyltransferases, and to define the gene clusters implicated in the successful spread of K. pneumoniae ST-15 in Spain.
Sample: AI2870 DNA
SAMEA8065728 • ERS5752899 • All experiments • All runs
Library:
Name: FAK60499_AI2870
Instrument: GridION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: Genomic DNA from Carbapenem-resistant Enterobacteriaceae was used to prepare 1D Native barcoding genomic libraries using the Ligation sequencing kit SQK-LSK109 plus the Native Barcoding Expansion kits EXP-NBD103, EXP-NBD104 and EXP-NBD114 from Oxford Nanopore Technologies (ONT).
Runs: 1 run, 24,901 spots, 202.4M bases, 181.3Mb
Run# of Spots# of BasesSizePublished
ERR535316424,901202.4M181.3Mb2021-11-06

ID:
17169364

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...